PPGR - Gene Detail

Basic Information

Gene ID	PH02Gene33893 View in Genome Browser
Position	hic_scaffold_2:33222337-33225581 (-) 3244bp
Gene Type	gene
Gene Description (Protein Product)	Signal recognition particle 54 kDa protein
Organism	Phyllostachys edulis
Also AS	AT2G16360

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PH02Gene34261 Chromatin organization modifier domain

PH02Gene43601 Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

PH02Gene39613 Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Regulatory gene

PH02Gene00239 zinc finger

PH02Gene00315 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

PH02Gene00552 Zinc-finger double-stranded RNA-binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.