Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene34828
View in Genome Browser
Position
hic_scaffold_5:4819121-4820033 (+)
912bp
Gene Type
gene
Gene Description (Protein Product)
Protein kinase domain
Organism
Phyllostachys edulis
Also AS AT5G63370

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene43456 E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
PH02Gene43739 E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
PH02Gene44516 Ndr family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004693 cyclin-dependent protein serine/threonine kinase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006109 regulation of carbohydrate metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008380 RNA splicing BP
GO:0009555 pollen development BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010208 pollen wall assembly BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010584 pollen exine formation BP
GO:0010675 regulation of cellular carbohydrate metabolic process BP
GO:0010927 cellular component assembly involved in morphogenesis BP
GO:0010962 regulation of glucan biosynthetic process BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0022607 cellular component assembly BP
GO:0030198 extracellular matrix organization BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032881 regulation of polysaccharide metabolic process BP
GO:0032885 regulation of polysaccharide biosynthetic process BP
GO:0032950 regulation of beta-glucan metabolic process BP
GO:0032951 regulation of beta-glucan biosynthetic process BP
GO:0032952 regulation of (1->3)-beta-D-glucan metabolic process BP
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process BP
GO:0032989 cellular component morphogenesis BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036211 protein modification process BP
GO:0043062 extracellular structure organization BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043255 regulation of carbohydrate biosynthetic process BP
GO:0043412 macromolecule modification BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045229 external encapsulating structure organization BP
GO:0046483 heterocycle metabolic process BP
GO:0048229 gametophyte development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051726 regulation of cell cycle BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0085029 extracellular matrix assembly BP
GO:0090304 nucleic acid metabolic process BP
GO:0097472 cyclin-dependent protein kinase activity MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP