Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene39547
View in Genome Browser
Position
hic_scaffold_17:69397103-69420737 (+)
23634bp
Gene Type
gene
Gene Description (Protein Product)
isoform X1
Organism
Phyllostachys edulis
Also AS AT4G18470

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene42382 Nse4 C-terminal
PH02Gene44016 Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination
Regulatory gene
PH02Gene00239 zinc finger
PH02Gene00552 Zinc-finger double-stranded RNA-binding
PH02Gene00687 Domain of unknown function (DUF966)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000793 condensed chromosome CC
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0002215 defense response to nematode BP
GO:0002376 immune system process BP
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0002831 regulation of response to biotic stimulus BP
GO:0002832 negative regulation of response to biotic stimulus BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006310 DNA recombination BP
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009627 systemic acquired resistance BP
GO:0009814 defense response to other organism BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010112 regulation of systemic acquired resistance BP
GO:0010113 negative regulation of systemic acquired resistance BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010639 negative regulation of organelle organization BP
GO:0016043 cellular component organization BP
GO:0016444 somatic cell DNA recombination BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0030915 Smc5-Smc6 complex CC
GO:0031056 regulation of histone modification BP
GO:0031057 negative regulation of histone modification BP
GO:0031060 regulation of histone methylation BP
GO:0031061 negative regulation of histone methylation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0031399 regulation of protein modification process BP
GO:0031400 negative regulation of protein modification process BP
GO:0032101 regulation of response to external stimulus BP
GO:0032102 negative regulation of response to external stimulus BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043543 protein acylation BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043901 obsolete negative regulation of multi-organism process BP
GO:0043966 histone H3 acetylation BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0045088 regulation of innate immune response BP
GO:0045824 negative regulation of innate immune response BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050776 regulation of immune response BP
GO:0050777 negative regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051569 regulation of histone H3-K4 methylation BP
GO:0051572 negative regulation of histone H3-K4 methylation BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098542 defense response to other organism BP
GO:0106068 SUMO ligase complex CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902275 regulation of chromatin organization BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1905268 negative regulation of chromatin organization BP
GO:1990234 transferase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
GO:2001251 negative regulation of chromosome organization BP