PPGR - Gene Detail

Basic Information

Gene ID	PH02Gene40208 View in Genome Browser
Position	hic_scaffold_13:67587217-67595429 (-) 8212bp
Gene Type	gene
Gene Description (Protein Product)	RbcX protein
Organism	Phyllostachys edulis
Also AS	AT4G04330

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PH02Gene43927 Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance

PH02Gene48411 Acetyl-CoA carboxylase, central region

PH02Gene41737 Plastid acetyl-CoA carboxylase

Regulatory gene

PH02Gene00239 zinc finger

PH02Gene00315 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

PH02Gene00552 Zinc-finger double-stranded RNA-binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006457	protein folding	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0008150	biological_process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009409	response to cold	BP
GO:0009414	response to water deprivation	BP
GO:0009415	response to water	BP
GO:0009507	chloroplast	CC
GO:0009534	chloroplast thylakoid	CC
GO:0009536	plastid	CC
GO:0009579	thylakoid	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0031976	plastid thylakoid	CC
GO:0031984	organelle subcompartment	CC
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044183	protein folding chaperone	MF
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0061077	chaperone-mediated protein folding	BP
GO:1901700	response to oxygen-containing compound	BP