Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene40727
View in Genome Browser
Position
hic_scaffold_10:4929315-4931362 (+)
2047bp
Gene Type
gene
Gene Description (Protein Product)
Trm112p-like protein
Organism
Phyllostachys edulis
Also AS AT1G78190

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene41127 Methyltransferase small domain
PH02Gene47174 Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region
PH02Gene50542 Saccharopine dehydrogenase C-terminal domain
Regulatory gene
PH02Gene00233 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
PH02Gene00239 zinc finger
PH02Gene00304 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000154 rRNA modification BP
GO:0001510 RNA methylation BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006464 protein modification process BP
GO:0006479 protein methylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008213 protein alkylation BP
GO:0009451 RNA modification BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0018364 peptidyl-glutamine methylation BP
GO:0019538 protein metabolic process BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0030488 tRNA methylation BP
GO:0031167 rRNA methylation BP
GO:0032259 methylation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035265 organ growth BP
GO:0036211 protein modification process BP
GO:0036265 RNA (guanine-N7)-methylation BP
GO:0040007 growth BP
GO:0042127 regulation of cell population proliferation BP
GO:0042254 ribosome biogenesis BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048589 developmental growth BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051726 regulation of cell cycle BP
GO:0065007 biological regulation BP
GO:0070475 rRNA base methylation BP
GO:0070476 rRNA (guanine-N7)-methylation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP