Basic Information
Gene ID
Position
hic_scaffold_24:22175524-22177292 (+)
1768bp
Gene Type
gene
Gene Description (Protein Product)
pre-mRNA splicing factor component
Organism
Also AS AT1G09770

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene48260 Domain with 2 conserved Trp (W) residues
PH02Gene41282 mRNA splicing, via spliceosome
PH02Gene41783 generation of catalytic spliceosome for second transesterification step
Regulatory gene
PH02Gene00304 Dof domain, zinc finger
PH02Gene00562 Dof domain, zinc finger
PH02Gene00622 B3 domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.