PPGR - Gene Detail

Gene ID	PH02Gene41126 View in Genome Browser
Position	hic_scaffold_15:98438278-98441227 (+) 2949bp
Gene Type	gene
Gene Description (Protein Product)	Glycosyl transferase family 2
Organism	Phyllostachys edulis
Also AS	AT1G20575

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	PH02Gene46422 Mannosyltransferase (PIG-M) PH02Gene45957 Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis PH02Gene42408 Glycosyl transferases group 1
Regulatory gene	PH02Gene00602 No apical meristem (NAM) protein PH02Gene00810 Helix-loop-helix DNA-binding domain PH02Gene00821 NAC domain-containing protein 94

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0008150	biological_process	BP
GO:0012505	endomembrane system	CC
GO:0031501	mannosyltransferase complex	CC
GO:0032991	protein-containing complex	CC
GO:0033185	dolichol-phosphate-mannose synthase complex	CC
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0060359	response to ammonium ion	BP
GO:1901698	response to nitrogen compound	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00510	N-Glycan biosynthesis	N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].