Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene45921
View in Genome Browser
Position
hic_scaffold_4:60256345-60261957 (-)
5612bp
Gene Type
gene
Gene Description (Protein Product)
Aminotransferase class I and II
Organism
Phyllostachys edulis
Also AS AT1G70580

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene47370 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PH02Gene47759 Isocitrate/isopropylmalate dehydrogenase
PH02Gene47369 Fumarase C C-terminus
Regulatory gene
PH02Gene00239 zinc finger
PH02Gene00552 Zinc-finger double-stranded RNA-binding
PH02Gene00602 No apical meristem (NAM) protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001666 response to hypoxia BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005777 peroxisome CC
GO:0006950 response to stress BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008453 alanine-glyoxylate transaminase activity MF
GO:0008483 transaminase activity MF
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009628 response to abiotic stimulus BP
GO:0009853 photorespiration BP
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016740 transferase activity MF
GO:0016769 transferase activity, transferring nitrogenous groups MF
GO:0036293 response to decreased oxygen levels BP
GO:0042579 microbody CC
GO:0043094 cellular metabolic compound salvage BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0047635 alanine-oxo-acid transaminase activity MF
GO:0047958 glycine:2-oxoglutarate aminotransferase activity MF
GO:0048046 apoplast CC
GO:0050896 response to stimulus BP
GO:0070482 response to oxygen levels BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00710 Carbon fixation in photosynthetic organisms -
map00630 Glyoxylate and dicarboxylate metabolism -
map00260 Glycine, serine and threonine metabolism Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
map00250 Alanine, aspartate and glutamate metabolism -