Basic Information
Gene ID
Position
hic_scaffold_17:84364696-84367279 (+)
2583bp
Gene Type
gene
Gene Description (Protein Product)
"Pectate lyase
Organism
Also AS AT1G14420

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene47384 Pectinesterase
PH02Gene47654 Acts in the modification of cell walls via demethylesterification of cell wall pectin
PH02Gene46310 Glycosyl hydrolases family 28
Regulatory gene
PH02Gene00304 Dof domain, zinc finger
PH02Gene00562 Dof domain, zinc finger
PH02Gene00622 B3 domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0008150 biological_process BP
GO:0009664 plant-type cell wall organization BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides MF
GO:0030570 pectate lyase activity MF
GO:0045229 external encapsulating structure organization BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071840 cellular component organization or biogenesis BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -