Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene47460
View in Genome Browser
Position
hic_scaffold_13:60559987-60560979 (-)
992bp
Gene Type
gene
Gene Description (Protein Product)
Phenylalanine ammonia-lyase
Organism
Phyllostachys edulis
Also AS AT3G53260

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene50797 Prephenate dehydratase
PH02Gene49813 Tyrosine DOPA decarboxylase
PH02Gene49829 Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine
Regulatory gene
PH02Gene00304 Dof domain, zinc finger
PH02Gene00452 DNA-binding domain in plant proteins such as APETALA2 and EREBPs
PH02Gene00562 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009314 response to radiation BP
GO:0009411 response to UV BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009416 response to light stimulus BP
GO:0009555 pollen development BP
GO:0009628 response to abiotic stimulus BP
GO:0009636 response to toxic substance BP
GO:0009696 salicylic acid metabolic process BP
GO:0009698 phenylpropanoid metabolic process BP
GO:0009699 phenylpropanoid biosynthetic process BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009739 response to gibberellin BP
GO:0009808 lignin metabolic process BP
GO:0009819 drought recovery BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010224 response to UV-B BP
GO:0010243 response to organonitrogen compound BP
GO:0010817 regulation of hormone levels BP
GO:0014070 response to organic cyclic compound BP
GO:0016054 organic acid catabolic process BP
GO:0016598 protein arginylation BP
GO:0016829 lyase activity MF
GO:0016840 carbon-nitrogen lyase activity MF
GO:0016841 ammonia-lyase activity MF
GO:0016999 antibiotic metabolic process BP
GO:0017001 antibiotic catabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0018958 phenol-containing compound metabolic process BP
GO:0019336 phenol-containing compound catabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019538 protein metabolic process BP
GO:0019748 secondary metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019941 modification-dependent protein catabolic process BP
GO:0030163 protein catabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0032991 protein-containing complex CC
GO:0033993 response to lipid BP
GO:0036211 protein modification process BP
GO:0042221 response to chemical BP
GO:0042445 hormone metabolic process BP
GO:0042447 hormone catabolic process BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042537 benzene-containing compound metabolic process BP
GO:0042737 xenobiotic catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043436 oxoacid metabolic process BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044550 secondary metabolite biosynthetic process BP
GO:0045548 phenylalanine ammonia-lyase activity MF
GO:0046244 salicylic acid catabolic process BP
GO:0046271 phenylpropanoid catabolic process BP
GO:0046274 lignin catabolic process BP
GO:0046395 carboxylic acid catabolic process BP
GO:0046677 response to antibiotic BP
GO:0046898 response to cycloheximide BP
GO:0048229 gametophyte development BP
GO:0048856 anatomical structure development BP
GO:0050896 response to stimulus BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0060992 response to fungicide BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071704 organic substance metabolic process BP
GO:0072329 monocarboxylic acid catabolic process BP
GO:0080167 response to karrikin BP
GO:0097305 response to alcohol BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901616 organic hydroxy compound catabolic process BP
GO:1901654 response to ketone BP
GO:1901698 response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00940 Phenylpropanoid biosynthesis Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
map00940 Phenylpropanoid biosynthesis Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
map00360 Phenylalanine metabolism -
map00360 Phenylalanine metabolism -