PPGR - Gene Detail

Basic Information

Gene ID	PH02Gene48970 View in Genome Browser
Position	hic_scaffold_22:44568792-44569551 (+) 759bp
Gene Type	gene
Gene Description (Protein Product)	cinnamyl alcohol dehydrogenase 5
Organism	Phyllostachys edulis
Also AS	AT4G37970

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PH02Gene50152 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

PH02Gene49818 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

PH02Gene50714 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Regulatory gene

PH02Gene00094 Lateral organ boundaries (LOB) domain

PH02Gene00233 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

PH02Gene00349 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.