PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	MA_10433436g0010.g View in Genome Browser
Position	MA_10433436:2322-2671 (-) 349bp
Gene Type	gene
Gene Description (Protein Product)	Small ubiquitin-related modifier 2
Organism	Picea abies
Also AS	AT5G55160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	MA_19582g0010.g Belongs to the ubiquitin-conjugating enzyme family MA_3901g0010.g Belongs to the ubiquitin-conjugating enzyme family MA_916581g0010.g Belongs to the ubiquitin-conjugating enzyme family
Regulatory gene	MA_10048467g0010.g SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains MA_10157944g0010.g transcription MA_101790g0010.g transcription

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.