PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	MA_686028g0010.g View in Genome Browser
Position	MA_686028:1137-1646 (+) 509bp
Gene Type	gene
Gene Description (Protein Product)	cell division
Organism	Picea abies
Also AS	AT3G09840

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	MA_9368311g0010.g UBX domain-containing protein MA_7609762g0010.g Ubiquitin family MA_9108314g0010.g Ubiquitin family
Regulatory gene	MA_10266929g0010.g PHR1-LIKE 1-like MA_10288263g0010.g MYB-CC type transfactor, LHEQLE motif MA_10427358g0010.g Myb/SANT-like DNA-binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005794	Golgi apparatus	CC
GO:0005819	spindle	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0005856	cytoskeleton	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0008150	biological_process	BP
GO:0009506	plasmodesma	CC
GO:0009524	phragmoplast	CC
GO:0009653	anatomical structure morphogenesis	BP
GO:0009826	unidimensional cell growth	BP
GO:0009846	pollen germination	BP
GO:0009856	pollination	BP
GO:0009860	pollen tube growth	BP
GO:0009932	cell tip growth	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0012505	endomembrane system	CC
GO:0015630	microtubule cytoskeleton	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0022414	reproductive process	BP
GO:0022626	cytosolic ribosome	CC
GO:0030054	cell junction	CC
GO:0030154	cell differentiation	BP
GO:0030312	external encapsulating structure	CC
GO:0031347	regulation of defense response	BP
GO:0031348	negative regulation of defense response	BP
GO:0031647	regulation of protein stability	BP
GO:0031648	protein destabilization	BP
GO:0031967	organelle envelope	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031975	envelope	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0040007	growth	BP
GO:0042221	response to chemical	BP
GO:0042802	identical protein binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044706	multi-multicellular organism process	BP
GO:0046686	response to cadmium ion	BP
GO:0048046	apoplast	CC
GO:0048468	cell development	BP
GO:0048519	negative regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0048588	developmental cell growth	BP
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048868	pollen tube development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050896	response to stimulus	BP
GO:0051301	cell division	BP
GO:0051704	obsolete multi-organism process	BP
GO:0055044	symplast	CC
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0080134	regulation of response to stress	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.