Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
PILA_00009.g
View in Genome Browser
Position
scaffold_12840:696945-706911 (-)
9966bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the peptidase C1 family
Organism
Pinus lambertiana
Also AS AT1G29080

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_12761.g Belongs to the peptidase C1 family
PILA_10297.g Belongs to the peptidase C1 family
PILA_02723.g Ubiquitin-like modifier-activating enzyme atg7
Regulatory gene
PILA_00133.g transcription factor
PILA_00148.g homeobox-leucine zipper protein
PILA_00341.g ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000323 lytic vacuole CC
GO:0001503 ossification BP
GO:0001894 tissue homeostasis BP
GO:0001957 intramembranous ossification BP
GO:0001968 fibronectin binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004175 endopeptidase activity MF
GO:0004197 cysteine-type endopeptidase activity MF
GO:0004252 serine-type endopeptidase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005518 collagen binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005615 extracellular space CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005768 endosome CC
GO:0005773 vacuole CC
GO:0005775 vacuolar lumen CC
GO:0006508 proteolysis BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008233 peptidase activity MF
GO:0008234 cysteine-type peptidase activity MF
GO:0008236 serine-type peptidase activity MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016043 cellular component organization BP
GO:0016787 hydrolase activity MF
GO:0017171 serine hydrolase activity MF
GO:0019538 protein metabolic process BP
GO:0022411 cellular component disassembly BP
GO:0022617 extracellular matrix disassembly BP
GO:0030163 protein catabolic process BP
GO:0030198 extracellular matrix organization BP
GO:0030574 collagen catabolic process BP
GO:0030856 regulation of epithelial cell differentiation BP
GO:0031410 cytoplasmic vesicle CC
GO:0031904 endosome lumen CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0032501 multicellular organismal process BP
GO:0032963 collagen metabolic process BP
GO:0036019 endolysosome CC
GO:0036021 endolysosome lumen CC
GO:0036072 direct ossification BP
GO:0042592 homeostatic process BP
GO:0043062 extracellular structure organization BP
GO:0043170 macromolecule metabolic process BP
GO:0043202 lysosomal lumen CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043394 proteoglycan binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044421 obsolete extracellular region part CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044437 obsolete vacuolar part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045453 bone resorption BP
GO:0045595 regulation of cell differentiation BP
GO:0045604 regulation of epidermal cell differentiation BP
GO:0045616 regulation of keratinocyte differentiation BP
GO:0045682 regulation of epidermis development BP
GO:0046849 bone remodeling BP
GO:0048771 tissue remodeling BP
GO:0048871 multicellular organismal-level homeostasis BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0060249 anatomical structure homeostasis BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070011 peptidase activity MF
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097367 carbohydrate derivative binding MF
GO:0097708 intracellular vesicle CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:2000026 regulation of multicellular organismal development BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.