Basic Information
Gene ID
Position
scaffold_5145:3305779-3377560 (-)
71781bp
Gene Type
gene
Gene Description (Protein Product)
"DNA-directed RNA polymerases II
Organism
Also AS AT2G15430

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_23031.g SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
PILA_21543.g DNA-directed RNA polymerases
PILA_21974.g DNA-directed RNA polymerases I, II, and III
Regulatory gene
PILA_00158.g NAC domain-containing protein
PILA_00193.g Protein CUP-SHAPED COTYLEDON
PILA_00341.g ethylene-responsive transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03020 RNA polymerase -