Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
PILA_13892.g
View in Genome Browser
Position
scaffold_6097:2668334-2673272 (+)
4938bp
Gene Type
gene
Gene Description (Protein Product)
serine threonine-protein phosphatase
Organism
Pinus lambertiana
Also AS AT1G10430

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_34690.g Autophagy-related protein
PILA_25478.g serine threonine-protein kinase
PILA_21216.g PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Regulatory gene
PILA_00133.g transcription factor
PILA_00306.g transcription factor
PILA_00355.g transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004721 phosphoprotein phosphatase activity MF
GO:0004722 protein serine/threonine phosphatase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005777 peroxisome CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006464 protein modification process BP
GO:0006470 protein dephosphorylation BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009657 plastid organization BP
GO:0009658 chloroplast organization BP
GO:0009787 regulation of abscisic acid-activated signaling pathway BP
GO:0009788 negative regulation of abscisic acid-activated signaling pathway BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009902 chloroplast relocation BP
GO:0009903 chloroplast avoidance movement BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010565 regulation of cellular ketone metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010817 regulation of hormone levels BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016311 dephosphorylation BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016791 phosphatase activity MF
GO:0019216 regulation of lipid metabolic process BP
GO:0019217 regulation of fatty acid metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019750 chloroplast localization BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031998 regulation of fatty acid beta-oxidation BP
GO:0032000 positive regulation of fatty acid beta-oxidation BP
GO:0032879 regulation of localization BP
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0036211 protein modification process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042579 microbody CC
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045834 positive regulation of lipid metabolic process BP
GO:0045923 positive regulation of fatty acid metabolic process BP
GO:0046320 regulation of fatty acid oxidation BP
GO:0046321 positive regulation of fatty acid oxidation BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050994 regulation of lipid catabolic process BP
GO:0050996 positive regulation of lipid catabolic process BP
GO:0051049 regulation of transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051644 plastid localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0051667 establishment of plastid localization BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0062013 positive regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070727 cellular macromolecule localization BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0080090 regulation of primary metabolic process BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901419 regulation of response to alcohol BP
GO:1901420 negative regulation of response to alcohol BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1905957 regulation of cellular response to alcohol BP
GO:1905958 negative regulation of cellular response to alcohol BP
GO:2000012 regulation of auxin polar transport BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.