Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
PILA_26720.g
View in Genome Browser
Position
scaffold_12249:6585368-6587412 (-)
2044bp
Gene Type
gene
Gene Description (Protein Product)
pre-mRNA-splicing factor
Organism
Pinus lambertiana
Also AS AT1G03140

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_32215.g PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PILA_30024.g Thioredoxin-like protein 4B
PILA_33758.g NHP2-like protein 1
Regulatory gene
PILA_00158.g NAC domain-containing protein
PILA_00193.g Protein CUP-SHAPED COTYLEDON
PILA_00479.g No apical meristem (NAM) protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000350 generation of catalytic spliceosome for second transesterification step BP
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000393 spliceosomal conformational changes to generate catalytic conformation BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0000956 nuclear-transcribed mRNA catabolic process BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005681 spliceosomal complex CC
GO:0005682 U5 snRNP CC
GO:0005684 U2-type spliceosomal complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006403 RNA localization BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008298 intracellular mRNA localization BP
GO:0008380 RNA splicing BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0022607 cellular component assembly BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0022618 ribonucleoprotein complex assembly BP
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046540 U4/U6 x U5 tri-snRNP complex CC
GO:0046700 heterocycle catabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0051179 localization BP
GO:0051641 cellular localization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0070727 cellular macromolecule localization BP
GO:0071020 post-spliceosomal complex CC
GO:0071021 U2-type post-spliceosomal complex CC
GO:0071025 RNA surveillance BP
GO:0071027 nuclear RNA surveillance BP
GO:0071028 nuclear mRNA surveillance BP
GO:0071030 nuclear mRNA surveillance of spliceosomal pre-mRNA splicing BP
GO:0071033 nuclear mRNA surveillance BP
GO:0071048 nuclear mRNA surveillance BP
GO:0071704 organic substance metabolic process BP
GO:0071826 ribonucleoprotein complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097525 spliceosomal snRNP complex CC
GO:0097526 spliceosomal tri-snRNP complex CC
GO:0120114 Sm-like protein family complex CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.