PPGR - Gene Detail

Basic Information

Gene ID	PILA_29058.g View in Genome Browser
Position	scaffold_6209:1560199-1828461 (+) 268262bp
Gene Type	gene
Gene Description (Protein Product)	serine threonine-protein phosphatase 2A regulatory subunit B'' subunit
Organism	Pinus lambertiana
Also AS	AT5G18580

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PILA_31882.g Mitochondrial ribosomal subunit protein

PILA_34065.g phosphatase 2A 55 kDa regulatory subunit B

PILA_33852.g Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000902	cell morphogenesis	BP
GO:0000910	cytokinesis	BP
GO:0000911	cytokinesis by cell plate formation	BP
GO:0000913	preprophase band assembly	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005819	spindle	CC
GO:0005856	cytoskeleton	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007049	cell cycle	BP
GO:0008150	biological_process	BP
GO:0009524	phragmoplast	CC
GO:0009653	anatomical structure morphogenesis	BP
GO:0009826	unidimensional cell growth	BP
GO:0009987	cellular process	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0022402	cell cycle process	BP
GO:0022607	cellular component assembly	BP
GO:0030865	cortical cytoskeleton organization	BP
GO:0032502	developmental process	BP
GO:0032506	cytokinetic process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0040007	growth	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0051301	cell division	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:1902410	mitotic cytokinetic process	BP
GO:1903047	mitotic cell cycle process	BP

KEGG Term	Name	Description
map03015	mRNA surveillance pathway	The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.