Basic Information
Gene ID
Position
scaffold_4770:205334-210288 (-)
4954bp
Gene Type
gene
Gene Description (Protein Product)
TRAF-type zinc finger
Organism
Also AS AT3G11950

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_32718.g Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family
PILA_32595.g Belongs to the FPP GGPP synthase family
PILA_31130.g homogentisate phytyltransferase 1
Regulatory gene
PILA_00081.g MYB-CC type transfactor, LHEQLE motif
PILA_00148.g homeobox-leucine zipper protein
PILA_00523.g isoform X1

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.