Basic Information
Gene ID
Position
scaffold_11842:495643-498848 (-)
3205bp
Gene Type
gene
Gene Description (Protein Product)
Autophagy-related protein
Organism
Also AS AT1G54710

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_35088.g ApaG domain
PILA_37915.g SNF1-related protein kinase catalytic subunit alpha
PILA_35191.g F-box-like WD repeat-containing protein
Regulatory gene
PILA_00027.g DNA binding domain
PILA_00088.g Transcription factor
PILA_00168.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0000226 microtubule cytoskeleton organization BP
GO:0000785 chromatin CC
GO:0001952 regulation of cell-matrix adhesion BP
GO:0001953 negative regulation of cell-matrix adhesion BP
GO:0003674 molecular_function MF
GO:0003682 chromatin binding MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005881 cytoplasmic microtubule CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006810 transport BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007030 Golgi organization BP
GO:0007162 negative regulation of cell adhesion BP
GO:0007275 multicellular organism development BP
GO:0008047 enzyme activator activity MF
GO:0008092 cytoskeletal protein binding MF
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010256 endomembrane system organization BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010594 regulation of endothelial cell migration BP
GO:0010595 positive regulation of endothelial cell migration BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010632 regulation of epithelial cell migration BP
GO:0010634 positive regulation of epithelial cell migration BP
GO:0010638 positive regulation of organelle organization BP
GO:0010698 acetyltransferase activator activity MF
GO:0010810 regulation of cell-substrate adhesion BP
GO:0010812 negative regulation of cell-substrate adhesion BP
GO:0015630 microtubule cytoskeleton CC
GO:0015631 tubulin binding MF
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0030155 regulation of cell adhesion BP
GO:0030234 enzyme regulator activity MF
GO:0030334 regulation of cell migration BP
GO:0030335 positive regulation of cell migration BP
GO:0031023 microtubule organizing center organization BP
GO:0031252 cell leading edge CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031344 regulation of cell projection organization BP
GO:0031346 positive regulation of cell projection organization BP
GO:0031667 response to nutrient levels BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032878 regulation of establishment or maintenance of cell polarity BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0033043 regulation of organelle organization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0034260 negative regulation of GTPase activity BP
GO:0035035 histone acetyltransferase binding MF
GO:0035148 tube formation BP
GO:0035239 tube morphogenesis BP
GO:0035257 nuclear receptor binding MF
GO:0035295 tube development BP
GO:0035327 euchromatin CC
GO:0040012 regulation of locomotion BP
GO:0040017 positive regulation of locomotion BP
GO:0042221 response to chemical BP
GO:0042393 histone binding MF
GO:0042594 response to starvation BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043086 negative regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043547 positive regulation of GTPase activity BP
GO:0043627 response to estrogen BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044093 positive regulation of molecular function BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045111 intermediate filament cytoskeleton CC
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0048487 beta-tubulin binding MF
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051270 obsolete regulation of cellular component movement BP
GO:0051272 obsolete positive regulation of cellular component movement BP
GO:0051336 regulation of hydrolase activity BP
GO:0051345 positive regulation of hydrolase activity BP
GO:0051346 negative regulation of hydrolase activity BP
GO:0051427 hormone receptor binding MF
GO:0051489 regulation of filopodium assembly BP
GO:0051491 positive regulation of filopodium assembly BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0051716 cellular response to stimulus BP
GO:0051893 regulation of focal adhesion assembly BP
GO:0051895 negative regulation of focal adhesion assembly BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060341 regulation of cellular localization BP
GO:0060491 regulation of cell projection assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070201 regulation of establishment of protein localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071391 cellular response to estrogen stimulus BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090109 regulation of cell-substrate junction assembly BP
GO:0090316 positive regulation of intracellular protein transport BP
GO:0090630 activation of GTPase activity BP
GO:0098772 molecular function regulator activity MF
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0120032 regulation of plasma membrane bounded cell projection assembly BP
GO:0120034 positive regulation of plasma membrane bounded cell projection assembly BP
GO:0120035 regulation of plasma membrane bounded cell projection organization BP
GO:1901888 regulation of cell junction assembly BP
GO:1901889 negative regulation of cell junction assembly BP
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1903391 regulation of adherens junction organization BP
GO:1903392 negative regulation of adherens junction organization BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000114 regulation of establishment of cell polarity BP
GO:2000145 regulation of cell motility BP
GO:2000147 positive regulation of cell motility BP
GO:2000249 regulation of actin cytoskeleton reorganization BP
GO:2000251 positive regulation of actin cytoskeleton reorganization BP
GO:2001141 regulation of RNA biosynthetic process BP