Basic Information
Gene ID
Position
scaffold_8576:4694896-4748198 (-)
53302bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein
Organism
Also AS AT3G62840

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PILA_37972.g U4 U6 small nuclear ribonucleoprotein
PILA_36190.g Sm-like protein LSM8
PILA_37646.g U1 small nuclear ribonucleoprotein 70

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.