Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
PILA_38172.g
View in Genome Browser
Position
scaffold_12288:900783-903007 (-)
2224bp
Gene Type
gene
Gene Description (Protein Product)
"SANT SWI3
Organism
Pinus lambertiana
Also AS AT1G66230

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Regulatory gene
PILA_00158.g NAC domain-containing protein
PILA_00193.g Protein CUP-SHAPED COTYLEDON
PILA_00479.g No apical meristem (NAM) protein
Target gene
PILA_00001.g transposition, RNA-mediated
PILA_00010.g Belongs to the cyclin family
PILA_00024.g Indole-3-acetic acid-amido synthetase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000976 transcription cis-regulatory region binding MF
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific MF
GO:0000988 obsolete transcription factor activity, protein binding MF
GO:0000989 obsolete transcription factor activity, transcription factor binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding MF
GO:0001134 obsolete transcription regulator recruiting activity MF
GO:0001135 obsolete RNA polymerase II transcription regulator recruiting activity MF
GO:0001158 cis-regulatory region sequence-specific DNA binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0008150 biological_process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0032502 developmental process BP
GO:0035326 cis-regulatory region sequence-specific DNA binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043565 sequence-specific DNA binding MF
GO:0044087 regulation of cellular component biogenesis BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0047484 regulation of response to osmotic stress BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0097159 organic cyclic compound binding MF
GO:0140110 transcription regulator activity MF
GO:1901000 regulation of response to salt stress BP
GO:1901002 positive regulation of response to salt stress BP
GO:1901363 heterocyclic compound binding MF
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903338 regulation of cell wall organization or biogenesis BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000652 regulation of secondary cell wall biogenesis BP
GO:2001141 regulation of RNA biosynthetic process BP