PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt0G10630 View in Genome Browser
Position	tig00059690:39253-41496 (-) 2243bp
Gene Type	gene
Gene Description (Protein Product)	Transcription factor Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION Transcription factor ABORTED
Organism	Pinus tabuliformis
Also AS	AT5G57150AT3G26744

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pt9G60580 - PtJG23760 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery Pt8G63510 centromere protein
Regulatory gene	Pt0G01630 dof zinc finger protein Pt0G07980 dof zinc finger protein Pt1G66310 Dof domain, zinc finger
Target gene	Pt0G00010 phospholipase Pt0G00260 Pt0G00360 Belongs to the peptidase A1 family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000302	response to reactive oxygen species	BP
GO:0003674	molecular_function	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0008150	biological_process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009723	response to ethylene	BP
GO:0009725	response to hormone	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010039	response to iron ion	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010959	regulation of metal ion transport	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0032879	regulation of localization	BP
GO:0033554	cellular response to stress	BP
GO:0034599	cellular response to oxidative stress	BP
GO:0034614	cellular response to reactive oxygen species	BP
GO:0034756	regulation of iron ion transport	BP
GO:0035690	cellular response to xenobiotic stimulus	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0043269	regulation of monoatomic ion transport	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071241	cellular response to inorganic substance	BP
GO:0071248	cellular response to metal ion	BP
GO:0071281	cellular response to iron ion	BP
GO:0071310	cellular response to organic substance	BP
GO:0071369	cellular response to ethylene stimulus	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071731	response to nitric oxide	BP
GO:0071732	cellular response to nitric oxide	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097366	response to bronchodilator	BP
GO:0140110	transcription regulator activity	MF
GO:1901698	response to nitrogen compound	BP
GO:1901699	cellular response to nitrogen compound	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902170	cellular response to reactive nitrogen species	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP
GO:0000003	reproduction	BP
GO:0000976	transcription cis-regulatory region binding	MF
GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	MF
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	MF
GO:0000987	cis-regulatory region sequence-specific DNA binding	MF
GO:0001012	RNA polymerase II transcription regulatory region sequence-specific DNA binding	MF
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0003006	developmental process involved in reproduction	BP
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0007275	multicellular organism development	BP
GO:0009555	pollen development	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009791	post-embryonic development	BP
GO:0009908	flower development	BP
GO:0022414	reproductive process	BP
GO:0030154	cell differentiation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043565	sequence-specific DNA binding	MF
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0048229	gametophyte development	BP
GO:0048367	shoot system development	BP
GO:0048437	floral organ development	BP
GO:0048438	floral whorl development	BP
GO:0048443	stamen development	BP
GO:0048444	floral organ morphogenesis	BP
GO:0048448	stamen morphogenesis	BP
GO:0048449	floral organ formation	BP
GO:0048455	stamen formation	BP
GO:0048466	androecium development	BP
GO:0048608	reproductive structure development	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048653	anther development	BP
GO:0048654	anther morphogenesis	BP
GO:0048655	anther wall tapetum morphogenesis	BP
GO:0048656	anther wall tapetum formation	BP
GO:0048657	anther wall tapetum cell differentiation	BP
GO:0048658	anther wall tapetum development	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0061458	reproductive system development	BP
GO:0090567	reproductive shoot system development	BP
GO:0090696	post-embryonic plant organ development	BP
GO:0090697	post-embryonic plant organ morphogenesis	BP
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0099402	plant organ development	BP
GO:1901363	heterocyclic compound binding	MF
GO:1905392	plant organ morphogenesis	BP
GO:1905393	plant organ formation	BP
GO:1990837	sequence-specific double-stranded DNA binding	MF

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00520	Amino sugar and nucleotide sugar metabolism	-
map00053	Ascorbate and aldarate metabolism	-
map00040	Pentose and glucuronate interconversions	-