Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt1G33840
View in Genome Browser
Position
chr1:946799945-946806789 (-)
6844bp
Gene Type
gene
Gene Description (Protein Product)
nucleobase-ascorbate transporter
Nucleobase-ascorbate transporter 6
Organism
Pinus tabuliformis
Also AS AT1G60030AT5G49990AT5G62890

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG29090 Introduction of a cis double bond between carbons of the acyl chain
Pt2G28950 Introduction of a cis double bond between carbons of the acyl chain
Pt2G28950 Acyl- acyl-carrier-protein desaturase
Regulatory gene
Pt0G01110 Myb-like DNA-binding domain
Pt0G01630 dof zinc finger protein
Pt0G02510 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005783 endoplasmic reticulum CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0009506 plasmodesma CC
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0030054 cell junction CC
GO:0030312 external encapsulating structure CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0055044 symplast CC
GO:0071944 cell periphery CC
KEGG Term Name Description
map03450 Non-homologous end-joining Nonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX complex in yeast), processing of ends, and recruitment of the DNA ligase IV (LIG4)-XRCC4 complex, which brings about ligation. A recent study shows that bacteria accomplish NHEJ using just two proteins (Ku and DNA ligase), whereas eukaryotes require many factors. NHEJ repairs DSBs at all stages of the cell cycle, bringing about the ligation of two DNA DSBs without the need for sequence homology, and so is error-prone.