PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt2G30020 View in Genome Browser
Position	chr2:878475652-878484338 (+) 8686bp
Gene Type	gene
Gene Description (Protein Product)	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism	Pinus tabuliformis
Also AS	AT5G62000

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Regulatory gene	Pt0G00460 Transcription factor Pt0G01630 dof zinc finger protein Pt0G07980 dof zinc finger protein
Target gene	Pt0G00200 - Pt0G00270 Pt0G00300

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0001101	response to acid chemical	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0007275	multicellular organism development	BP
GO:0007568	aging	BP
GO:0008150	biological_process	BP
GO:0008285	negative regulation of cell population proliferation	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009791	post-embryonic development	BP
GO:0009835	fruit ripening	BP
GO:0009836	fruit ripening, climacteric	BP
GO:0009838	abscission	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009900	dehiscence	BP
GO:0009908	flower development	BP
GO:0009909	regulation of flower development	BP
GO:0009911	positive regulation of flower development	BP
GO:0010033	response to organic substance	BP
GO:0010047	fruit dehiscence	BP
GO:0010150	leaf senescence	BP
GO:0010154	fruit development	BP
GO:0010227	floral organ abscission	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010959	regulation of metal ion transport	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0021700	developmental maturation	BP
GO:0022414	reproductive process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032879	regulation of localization	BP
GO:0033993	response to lipid	BP
GO:0034762	regulation of transmembrane transport	BP
GO:0034764	positive regulation of transmembrane transport	BP
GO:0034765	regulation of monoatomic ion transmembrane transport	BP
GO:0034767	positive regulation of monoatomic ion transmembrane transport	BP
GO:0035670	plant-type ovary development	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042221	response to chemical	BP
GO:0042802	identical protein binding	MF
GO:0042803	protein homodimerization activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043266	regulation of potassium ion transport	BP
GO:0043268	positive regulation of potassium ion transport	BP
GO:0043269	regulation of monoatomic ion transport	BP
GO:0043270	positive regulation of monoatomic ion transport	BP
GO:0043565	sequence-specific DNA binding	MF
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0045892	negative regulation of DNA-templated transcription	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0046982	protein heterodimerization activity	MF
GO:0046983	protein dimerization activity	MF
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048437	floral organ development	BP
GO:0048438	floral whorl development	BP
GO:0048440	carpel development	BP
GO:0048467	gynoecium development	BP
GO:0048481	plant ovule development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048582	positive regulation of post-embryonic development	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048831	regulation of shoot system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051094	positive regulation of developmental process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051240	positive regulation of multicellular organismal process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0071695	anatomical structure maturation	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090567	reproductive shoot system development	BP
GO:0090693	plant organ senescence	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:0099402	plant organ development	BP
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901379	regulation of potassium ion transmembrane transport	BP
GO:1901381	positive regulation of potassium ion transmembrane transport	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1902679	negative regulation of RNA biosynthetic process	BP
GO:1903286	regulation of potassium ion import	BP
GO:1903288	positive regulation of potassium ion import across plasma membrane	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903507	negative regulation of nucleic acid-templated transcription	BP
GO:1904062	regulation of monoatomic cation transmembrane transport	BP
GO:1904064	positive regulation of cation transmembrane transport	BP
GO:2000026	regulation of multicellular organismal development	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2000241	regulation of reproductive process	BP
GO:2000243	positive regulation of reproductive process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-