Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt3G14990
View in Genome Browser
Position
chr3:470839926-470904155 (-)
64229bp
Gene Type
gene
Gene Description (Protein Product)
photosystem II core complex proteins psbY
Organism
Pinus tabuliformis
Also AS AT1G67740

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pt6G58750 Photosystem I reaction center subunit psaK
PtQG00780 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Pt4G36640 UPF0603 protein At1g54780
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0008150 biological_process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009507 chloroplast CC
GO:0009521 photosystem CC
GO:0009523 photosystem II CC
GO:0009532 plastid stroma CC
GO:0009533 chloroplast stromal thylakoid CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009628 response to abiotic stimulus BP
GO:0009642 response to light intensity BP
GO:0009644 response to high light intensity BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010109 regulation of photosynthesis BP
GO:0010205 photoinhibition BP
GO:0016020 membrane CC
GO:0019222 regulation of metabolic process BP
GO:0019725 cellular homeostasis BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0034357 photosynthetic membrane CC
GO:0042548 regulation of photosynthesis, light reaction BP
GO:0042592 homeostatic process BP
GO:0042651 thylakoid membrane CC
GO:0043155 negative regulation of photosynthesis, light reaction BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043467 regulation of generation of precursor metabolites and energy BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045454 cell redox homeostasis BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0098796 membrane protein complex CC
GO:1905156 negative regulation of photosynthesis BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00195 Photosynthesis Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.