Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt3G41150
View in Genome Browser
Position
chr3:1195851057-1195871590 (+)
20533bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Organism
Pinus tabuliformis
Also AS AT5G49160

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pt7G03660 Belongs to the histone deacetylase family. HD Type 1 subfamily
PtXG16440 DNA (cytosine-5)-methyltransferase
PtXG16440 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Regulatory gene
Pt0G00460 Transcription factor
Pt0G10980 Transcription factor
Pt0G14730 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006304 DNA modification BP
GO:0006305 DNA alkylation BP
GO:0006306 DNA methylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010216 negative regulation of gene expression via chromosomal DNA cytosine methylation BP
GO:0010424 DNA methylation on cytosine within a CG sequence BP
GO:0010468 regulation of gene expression BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0016458 obsolete gene silencing BP
GO:0019222 regulation of metabolic process BP
GO:0032259 methylation BP
GO:0032776 DNA methylation on cytosine BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044728 obsolete DNA methylation or demethylation BP
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].