PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt4G64630 View in Genome Browser
Position	chr4:2141513508-2141555378 (+) 41870bp
Gene Type	gene
Gene Description (Protein Product)	Signal recognition particle receptor signal recognition particle binding
Organism	Pinus tabuliformis
Also AS	AT4G30600

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pt7G63090 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane Pt7G63060 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane PtJG38410 Signal recognition particle 19 kDa
Regulatory gene	Pt0G01630 dof zinc finger protein Pt0G07980 dof zinc finger protein Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0002791	regulation of peptide secretion	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005047	signal recognition particle binding	MF
GO:0005488	binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005785	signal recognition particle receptor complex	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005791	rough endoplasmic reticulum	CC
GO:0006605	protein targeting	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006950	response to stress	BP
GO:0006986	response to unfolded protein	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007399	nervous system development	BP
GO:0007409	axonogenesis	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019001	guanyl nucleotide binding	MF
GO:0022008	neurogenesis	BP
GO:0023052	signaling	BP
GO:0030030	cell projection organization	BP
GO:0030154	cell differentiation	BP
GO:0030182	neuron differentiation	BP
GO:0030867	rough endoplasmic reticulum membrane	CC
GO:0030968	endoplasmic reticulum unfolded protein response	BP
GO:0031090	organelle membrane	CC
GO:0031175	neuron projection development	BP
GO:0031984	organelle subcompartment	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032990	cell part morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0033554	cellular response to stress	BP
GO:0034613	protein localization	BP
GO:0034620	cellular response to unfolded protein	BP
GO:0034976	response to endoplasmic reticulum stress	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0035966	response to topologically incorrect protein	BP
GO:0035967	cellular response to topologically incorrect protein	BP
GO:0036094	small molecule binding	MF
GO:0036498	IRE1-mediated unfolded protein response	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042221	response to chemical	BP
GO:0042886	amide transport	BP
GO:0043021	ribonucleoprotein complex binding	MF
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044877	protein-containing complex binding	MF
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0048468	cell development	BP
GO:0048666	neuron development	BP
GO:0048667	cell morphogenesis involved in neuron differentiation	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048812	neuron projection morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0048858	cell projection morphogenesis	BP
GO:0048869	cellular developmental process	BP
GO:0050708	regulation of protein secretion	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051046	regulation of secretion	BP
GO:0051049	regulation of transport	BP
GO:0051179	localization	BP
GO:0051223	regulation of protein transport	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0061564	axon development	BP
GO:0065007	biological regulation	BP
GO:0070201	regulation of establishment of protein localization	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071310	cellular response to organic substance	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072657	protein localization to membrane	BP
GO:0090087	regulation of peptide transport	BP
GO:0090150	establishment of protein localization to membrane	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0098588	bounding membrane of organelle	CC
GO:0098796	membrane protein complex	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:0120036	plasma membrane bounded cell projection organization	BP
GO:0120039	plasma membrane bounded cell projection morphogenesis	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1903530	regulation of secretion by cell	BP

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.