Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt5G57190
View in Genome Browser
Position
chr5:1926934107-1926941555 (-)
7448bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the actin family
Organism
Pinus tabuliformis
Also AS AT5G09810AT5G59370

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
PtXG22250 Ubiquitin family
PtQG32610 Ubiquitin-like domain
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G02880 -
Pt0G07980 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005198 structural molecule activity MF
GO:0005200 structural constituent of cytoskeleton MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005856 cytoskeleton CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0008150 biological_process BP
GO:0009506 plasmodesma CC
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0030054 cell junction CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0055044 symplast CC
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC