Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt6G61310
View in Genome Browser
Position
chr6:2007142734-2007280072 (+)
137338bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the arginase family
Organism
Pinus tabuliformis
Also AS AT4G08900

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pt9G37290 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Pt8G16860 Peptidase family M20/M25/M40
Pt7G47740 Belongs to the ubiquitin-conjugating enzyme family
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004053 arginase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006525 arginine metabolic process BP
GO:0006527 arginine catabolic process BP
GO:0006560 proline metabolic process BP
GO:0006570 tyrosine metabolic process BP
GO:0006576 biogenic amine metabolic process BP
GO:0006591 ornithine metabolic process BP
GO:0006595 polyamine metabolic process BP
GO:0006596 polyamine biosynthetic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008783 agmatinase activity MF
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009063 amino acid catabolic process BP
GO:0009064 glutamine family amino acid metabolic process BP
GO:0009065 glutamine family amino acid catabolic process BP
GO:0009072 aromatic amino acid metabolic process BP
GO:0009308 amine metabolic process BP
GO:0009309 amine biosynthetic process BP
GO:0009445 putrescine metabolic process BP
GO:0009446 putrescine biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009620 response to fungus BP
GO:0009987 cellular process BP
GO:0016054 organic acid catabolic process BP
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines MF
GO:0019752 carboxylic acid metabolic process BP
GO:0033388 putrescine biosynthetic process from arginine BP
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042401 biogenic amine biosynthetic process BP
GO:0042742 defense response to bacterium BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044106 amine metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046395 carboxylic acid catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0050897 cobalt ion binding MF
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0071704 organic substance metabolic process BP
GO:0097164 ammonium ion metabolic process BP
GO:0098542 defense response to other organism BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00330 Arginine and proline metabolism -