PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt7G55600 View in Genome Browser
Position	chr7:1816384365-1816627984 (-) 243619bp
Gene Type	gene
Gene Description (Protein Product)	expressed protein
Organism	Pinus tabuliformis
Also AS	AT2G35610

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtXG30750 Glycosyltransferase PtXG14180 Glycosyltransferase Pt8G25030 hydroxyproline O-arabinosyltransferase activity
Regulatory gene	Pt0G01110 Myb-like DNA-binding domain Pt0G01630 dof zinc finger protein Pt0G06240 Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000271	polysaccharide biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005794	Golgi apparatus	CC
GO:0005802	trans-Golgi network	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0006464	protein modification process	BP
GO:0006486	protein glycosylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009100	glycoprotein metabolic process	BP
GO:0009101	glycoprotein biosynthetic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009664	plant-type cell wall organization	BP
GO:0009832	plant-type cell wall biogenesis	BP
GO:0009888	tissue development	BP
GO:0009987	cellular process	BP
GO:0010015	root morphogenesis	BP
GO:0010053	root epidermal cell differentiation	BP
GO:0010054	trichoblast differentiation	BP
GO:0010383	cell wall polysaccharide metabolic process	BP
GO:0010393	galacturonan metabolic process	BP
GO:0012505	endomembrane system	CC
GO:0016043	cellular component organization	BP
GO:0016051	carbohydrate biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016757	glycosyltransferase activity	MF
GO:0016763	pentosyltransferase activity	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0021700	developmental maturation	BP
GO:0022622	root system development	BP
GO:0030154	cell differentiation	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0031984	organelle subcompartment	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033692	cellular polysaccharide biosynthetic process	BP
GO:0034637	cellular carbohydrate biosynthetic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0036211	protein modification process	BP
GO:0042546	cell wall biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043413	macromolecule glycosylation	BP
GO:0044036	cell wall macromolecule metabolic process	BP
GO:0044038	cell wall macromolecule biosynthetic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044264	cellular polysaccharide metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0045488	pectin metabolic process	BP
GO:0045489	pectin biosynthetic process	BP
GO:0048364	root development	BP
GO:0048468	cell development	BP
GO:0048469	cell maturation	BP
GO:0048731	system development	BP
GO:0048764	trichoblast maturation	BP
GO:0048765	root hair cell differentiation	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0052325	cell wall pectin biosynthetic process	BP
GO:0052546	cell wall pectin metabolic process	BP
GO:0052636	arabinosyltransferase activity	MF
GO:0070085	glycosylation	BP
GO:0070589	cellular component macromolecule biosynthetic process	BP
GO:0070592	cell wall polysaccharide biosynthetic process	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071669	plant-type cell wall organization or biogenesis	BP
GO:0071695	anatomical structure maturation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080147	root hair cell development	BP
GO:0090558	plant epidermis development	BP
GO:0090627	plant epidermal cell differentiation	BP
GO:0097708	intracellular vesicle	CC
GO:0098791	Golgi apparatus subcompartment	CC
GO:0099402	plant organ development	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1905392	plant organ morphogenesis	BP

KEGG Term	Name	Description
map00514	Other types of O-glycan biosynthesis	O-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or threonine residue, which is catalyzed by protein O-mannosyltransferases POMT1 and POMT2. Defects of these genes are linked to human diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].