Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt7G61540
View in Genome Browser
Position
chr7:2022840689-2022997842 (-)
157153bp
Gene Type
gene
Gene Description (Protein Product)
radicals which are normally produced within the cells and which are toxic to biological systems
Superoxide dismutase
Destroys radicals which are normally produced within the cells and which are toxic to biological systems
Organism
Pinus tabuliformis
Also AS AT5G51100AT4G25100

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG00170 radicals which are normally produced within the cells and which are toxic to biological systems
PtJG48700 Guanine nucleotide-binding protein alpha-1
PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
Pt0G01110 Myb-like DNA-binding domain
Pt0G02880 -
Pt0G06240 Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000302 response to reactive oxygen species BP
GO:0000303 response to superoxide BP
GO:0000305 response to oxygen radical BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004784 superoxide dismutase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006801 superoxide metabolic process BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009295 nucleoid CC
GO:0009314 response to radiation BP
GO:0009411 response to UV BP
GO:0009416 response to light stimulus BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009628 response to abiotic stimulus BP
GO:0009636 response to toxic substance BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0016209 antioxidant activity MF
GO:0016491 oxidoreductase activity MF
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor MF
GO:0019430 removal of superoxide radicals BP
GO:0033554 cellular response to stress BP
GO:0034599 cellular response to oxidative stress BP
GO:0034614 cellular response to reactive oxygen species BP
GO:0042221 response to chemical BP
GO:0042644 chloroplast nucleoid CC
GO:0042646 plastid nucleoid CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0050896 response to stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071450 cellular response to oxygen radical BP
GO:0071451 cellular response to superoxide BP
GO:0072593 reactive oxygen species metabolic process BP
GO:0097237 cellular response to toxic substance BP
GO:0098754 detoxification BP
GO:0098869 cellular oxidant detoxification BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1990748 cellular detoxification BP
GO:0001101 response to acid chemical BP
GO:0005488 binding MF
GO:0005507 copper ion binding MF
GO:0005515 protein binding MF
GO:0005739 mitochondrion CC
GO:0005886 plasma membrane CC
GO:0007623 circadian rhythm BP
GO:0009526 plastid envelope CC
GO:0009642 response to light intensity BP
GO:0009941 chloroplast envelope CC
GO:0010038 response to metal ion BP
GO:0010193 response to ozone BP
GO:0016020 membrane CC
GO:0019904 protein domain specific binding MF
GO:0031090 organelle membrane CC
GO:0031967 organelle envelope CC
GO:0031969 chloroplast membrane CC
GO:0031975 envelope CC
GO:0042170 plastid membrane CC
GO:0042493 response to xenobiotic stimulus BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0046677 response to antibiotic BP
GO:0046686 response to cadmium ion BP
GO:0046688 response to copper ion BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048511 rhythmic process BP
GO:0071944 cell periphery CC
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.