Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt8G12000
View in Genome Browser
Position
chr8:405356074-405614197 (+)
258123bp
Gene Type
gene
Gene Description (Protein Product)
Alpha-L-arabinofuranosidase
Alpha-L-arabinofuranosidase C-terminus
Organism
Pinus tabuliformis
Also AS AT3G10740

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG11690 Polygalacturonase-like
Pt9G03890 Aldo-keto reductase family 4 member
Pt9G04060 Belongs to the glycosyl hydrolase 28 family
Regulatory gene
Pt0G00460 Transcription factor
Pt0G03060 homeobox-leucine zipper protein
Pt0G09810 homeobox-leucine zipper protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000272 polysaccharide catabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009044 xylan 1,4-beta-xylosidase activity MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009505 plant-type cell wall CC
GO:0009987 cellular process BP
GO:0010383 cell wall polysaccharide metabolic process BP
GO:0010410 hemicellulose metabolic process BP
GO:0016052 carbohydrate catabolic process BP
GO:0016787 hydrolase activity MF
GO:0016798 hydrolase activity, acting on glycosyl bonds MF
GO:0030312 external encapsulating structure CC
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044036 cell wall macromolecule metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045491 xylan metabolic process BP
GO:0045493 xylan catabolic process BP
GO:0046556 alpha-L-arabinofuranosidase activity MF
GO:0048046 apoplast CC
GO:0071554 cell wall organization or biogenesis BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0097599 xylanase activity MF
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00520 Amino sugar and nucleotide sugar metabolism -