PPGR - Gene Detail

Gene ID	Pt8G30460 View in Genome Browser
Position	chr8:1021313874-1021316859 (+) 2985bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the FPP GGPP synthase family
Organism	Pinus tabuliformis
Also AS	AT4G38460

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	PtJG38260 Belongs to the FPP GGPP synthase family Pt9G33990 Belongs to the UPP synthase family PtXG18700 Amino acid kinase family protein
Regulatory gene	Pt0G01110 Myb-like DNA-binding domain Pt0G06240 Transcription factor Pt0G27150 transcription repressor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004659	prenyltransferase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006629	lipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009579	thylakoid	CC
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016740	transferase activity	MF
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	MF
GO:0034357	photosynthetic membrane	CC
GO:0042214	terpene metabolic process	BP
GO:0042651	thylakoid membrane	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043692	monoterpene metabolic process	BP
GO:0043693	monoterpene biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046246	terpene biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00900	Terpenoid backbone biosynthesis	Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.