PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt8G35690 View in Genome Browser
Position	chr8:1202206573-1202206983 (+) 410bp
Gene Type	gene
Gene Description (Protein Product)	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Organism	Pinus tabuliformis
Also AS	ATMG01360

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtJG19300 heme protein Pt9G58810 Cytochrome C1 Pt9G19650 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Regulatory gene	Pt0G00460 Transcription factor Pt0G02510 transcription factor Pt0G10980 Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005740	mitochondrial envelope	CC
GO:0005743	mitochondrial inner membrane	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006119	oxidative phosphorylation	BP
GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006163	purine nucleotide metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0006812	monoatomic cation transport	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009060	aerobic respiration	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009126	purine nucleoside monophosphate metabolic process	BP
GO:0009141	nucleoside triphosphate metabolic process	BP
GO:0009144	purine nucleoside triphosphate metabolic process	BP
GO:0009150	purine ribonucleotide metabolic process	BP
GO:0009161	ribonucleoside monophosphate metabolic process	BP
GO:0009167	purine ribonucleoside monophosphate metabolic process	BP
GO:0009199	ribonucleoside triphosphate metabolic process	BP
GO:0009205	purine ribonucleoside triphosphate metabolic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009987	cellular process	BP
GO:0015672	inorganic cation transmembrane transport	BP
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	BP
GO:0015990	electron transport coupled proton transport	BP
GO:0016020	membrane	CC
GO:0016310	phosphorylation	BP
GO:0017144	xenobiotic metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019646	aerobic electron transport chain	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019866	organelle inner membrane	CC
GO:0022900	electron transport chain	BP
GO:0022904	respiratory electron transport chain	BP
GO:0031090	organelle membrane	CC
GO:0031966	mitochondrial membrane	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0034220	monoatomic ion transmembrane transport	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042773	ATP synthesis coupled electron transport	BP
GO:0042775	mitochondrial ATP synthesis coupled electron transport	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045333	cellular respiration	BP
GO:0046034	ATP metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055085	transmembrane transport	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072521	purine-containing compound metabolic process	BP
GO:0098655	monoatomic cation transmembrane transport	BP
GO:0098660	inorganic ion transmembrane transport	BP
GO:0098662	inorganic cation transmembrane transport	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1902600	proton transmembrane transport	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00190	Oxidative phosphorylation	-