PPGR - Gene Detail

Basic Information

Gene ID	Pt9G27010 View in Genome Browser
Position	chr9:850770490-851188967 (+) 418477bp
Gene Type	gene
Gene Description (Protein Product)	Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome
Organism	Pinus tabuliformis
Also AS	AT3G53760

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PtJG29240 Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome

PtJG29240

PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Regulatory gene

Pt0G01630 dof zinc finger protein

Pt0G07980 dof zinc finger protein

Pt0G20740 (No apical meristem) protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000923	equatorial microtubule organizing center	CC
GO:0000930	gamma-tubulin complex	CC
GO:0003674	molecular_function	MF
GO:0005198	structural molecule activity	MF
GO:0005200	structural constituent of cytoskeleton	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005815	microtubule organizing center	CC
GO:0005819	spindle	CC
GO:0005856	cytoskeleton	CC
GO:0005911	cell-cell junction	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007020	microtubule nucleation	BP
GO:0007049	cell cycle	BP
GO:0007051	spindle organization	BP
GO:0007052	mitotic spindle organization	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008150	biological_process	BP
GO:0009506	plasmodesma	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009624	response to nematode	BP
GO:0009987	cellular process	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0015631	tubulin binding	MF
GO:0016043	cellular component organization	BP
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0022607	cellular component assembly	BP
GO:0030054	cell junction	CC
GO:0030865	cortical cytoskeleton organization	BP
GO:0031109	microtubule polymerization or depolymerization	BP
GO:0031122	cytoplasmic microtubule organization	BP
GO:0032153	cell division site	CC
GO:0032155	obsolete cell division site part	CC
GO:0032991	protein-containing complex	CC
GO:0034622	protein-containing complex assembly	BP
GO:0040007	growth	BP
GO:0043015	gamma-tubulin binding	MF
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043622	cortical microtubule organization	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044450	obsolete microtubule organizing center part	CC
GO:0044464	obsolete cell part	CC
GO:0046785	microtubule polymerization	BP
GO:0048285	organelle fission	BP
GO:0050896	response to stimulus	BP
GO:0051225	spindle assembly	BP
GO:0051258	protein polymerization	BP
GO:0051321	meiotic cell cycle	BP
GO:0051415	microtubule nucleation by interphase microtubule organizing center	BP
GO:0051418	microtubule nucleation by microtubule organizing center	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0055044	symplast	CC
GO:0065003	protein-containing complex assembly	BP
GO:0070925	organelle assembly	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090307	mitotic spindle assembly	BP
GO:0097435	supramolecular fiber organization	BP
GO:0140014	mitotic nuclear division	BP
GO:1902850	microtubule cytoskeleton organization involved in mitosis	BP
GO:1903047	mitotic cell cycle process	BP