PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pt9G28810 View in Genome Browser
Position	chr9:921187191-921187790 (+) 599bp
Gene Type	gene
Gene Description (Protein Product)	50S ribosomal protein
Organism	Pinus tabuliformis
Also AS	AT3G27850

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtQG38150 Belongs to the universal ribosomal protein uL15 family PtXG38160 RIBOSOMAL protein PtXG42980 Phosducin-like protein 3
Regulatory gene	Pt1G48760 Zinc-finger homeodomain protein Pt1G48770 Zinc-finger homeodomain protein Pt2G68270 Zinc-finger homeodomain protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000311	plastid large ribosomal subunit	CC
GO:0000313	organellar ribosome	CC
GO:0000315	organellar large ribosomal subunit	CC
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005840	ribosome	CC
GO:0005911	cell-cell junction	CC
GO:0006412	translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009295	nucleoid	CC
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009526	plastid envelope	CC
GO:0009532	plastid stroma	CC
GO:0009534	chloroplast thylakoid	CC
GO:0009535	chloroplast thylakoid membrane	CC
GO:0009536	plastid	CC
GO:0009547	plastid ribosome	CC
GO:0009570	chloroplast stroma	CC
GO:0009579	thylakoid	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009735	response to cytokinin	BP
GO:0009941	chloroplast envelope	CC
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0015934	large ribosomal subunit	CC
GO:0016020	membrane	CC
GO:0019538	protein metabolic process	BP
GO:0030054	cell junction	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0031976	plastid thylakoid	CC
GO:0031984	organelle subcompartment	CC
GO:0032991	protein-containing complex	CC
GO:0034357	photosynthetic membrane	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0042221	response to chemical	BP
GO:0042651	thylakoid membrane	CC
GO:0042742	defense response to bacterium	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0055035	plastid thylakoid membrane	CC
GO:0055044	symplast	CC
GO:0071704	organic substance metabolic process	BP
GO:0098542	defense response to other organism	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03010	Ribosome	-