Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt9G37720
View in Genome Browser
Position
chr9:1294573412-1294574683 (-)
1271bp
Gene Type
gene
Gene Description (Protein Product)
ABC transporter transmembrane region
Organism
Pinus tabuliformis
Also AS AT3G28860

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG27940 ABC transporter B family member
PtJG32930 ABC transporter B family member
PtJG31900 ABC transporter B family member
Regulatory gene
Pt0G02510 transcription factor
Pt0G02880 -
Pt0G13110 ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008361 regulation of cell size BP
GO:0009314 response to radiation BP
GO:0009411 response to UV BP
GO:0009416 response to light stimulus BP
GO:0009605 response to external stimulus BP
GO:0009606 tropism BP
GO:0009628 response to abiotic stimulus BP
GO:0009629 response to gravity BP
GO:0009630 gravitropism BP
GO:0009637 response to blue light BP
GO:0009639 response to red or far red light BP
GO:0009640 photomorphogenesis BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009791 post-embryonic development BP
GO:0009908 flower development BP
GO:0009914 hormone transport BP
GO:0009926 auxin polar transport BP
GO:0009958 positive gravitropism BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010218 response to far red light BP
GO:0010315 auxin export across the plasma membrane BP
GO:0010329 auxin efflux transmembrane transporter activity MF
GO:0010540 basipetal auxin transport BP
GO:0010541 acropetal auxin transport BP
GO:0010646 regulation of cell communication BP
GO:0010817 regulation of hormone levels BP
GO:0010928 regulation of auxin mediated signaling pathway BP
GO:0015562 efflux transmembrane transporter activity MF
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022414 reproductive process BP
GO:0022622 root system development BP
GO:0022857 transmembrane transporter activity MF
GO:0023051 regulation of signaling BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032535 regulation of cellular component size BP
GO:0042221 response to chemical BP
GO:0043473 pigmentation BP
GO:0043476 pigment accumulation BP
GO:0043478 pigment accumulation in response to UV light BP
GO:0043479 pigment accumulation in tissues in response to UV light BP
GO:0043480 pigment accumulation in tissues BP
GO:0043481 anthocyanin accumulation in tissues in response to UV light BP
GO:0044464 obsolete cell part CC
GO:0048364 root development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048438 floral whorl development BP
GO:0048443 stamen development BP
GO:0048466 androecium development BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048583 regulation of response to stimulus BP
GO:0048608 reproductive structure development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0048859 formation of anatomical boundary BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0060918 auxin transport BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0080161 auxin transmembrane transporter activity MF
GO:0090066 regulation of anatomical structure size BP
GO:0090567 reproductive shoot system development BP
GO:0090691 formation of plant organ boundary BP
GO:0090696 post-embryonic plant organ development BP
GO:0099402 plant organ development BP
KEGG Term Name Description
map02010 ABC transporters The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).