PPGR - Gene Detail

Basic Information

Gene ID	PtJG34510 View in Genome Browser
Position	chr11:1060589073-1060606476 (+) 17403bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the importin alpha family
Organism	Pinus tabuliformis
Also AS	AT1G09270

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PtQG25940 NUP50 (Nucleoporin 50 kDa)

PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

PtXG22250 Ubiquitin family

Regulatory gene

Pt0G00460 Transcription factor

Pt0G01630 dof zinc finger protein

Pt0G07980 dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005048	signal sequence binding	MF
GO:0005215	transporter activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005643	nuclear pore	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006606	protein import into nucleus	BP
GO:0006607	NLS-bearing protein import into nucleus	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0008104	protein localization	BP
GO:0008139	nuclear localization sequence binding	MF
GO:0008150	biological_process	BP
GO:0008565	obsolete protein transporter activity	MF
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009608	response to symbiont	BP
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0017038	protein import	BP
GO:0030581	symbiont intracellular protein transport in host	BP
GO:0031967	organelle envelope	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031975	envelope	CC
GO:0031981	nuclear lumen	CC
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033218	amide binding	MF
GO:0033365	protein localization to organelle	BP
GO:0034504	protein localization to nucleus	BP
GO:0034613	protein localization	BP
GO:0042277	peptide binding	MF
GO:0042886	amide transport	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044403	biological process involved in symbiotic interaction	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044766	obsolete multi-organism transport	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0050896	response to stimulus	BP
GO:0051169	nuclear transport	BP
GO:0051170	import into nucleus	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051701	biological process involved in interaction with host	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051708	symbiont intracellular protein transport in host	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0080034	host response to induction by symbiont of tumor, nodule or growth in host	BP
GO:1902579	obsolete multi-organism localization	BP
GO:1902581	obsolete multi-organism cellular localization	BP
GO:1902583	obsolete multi-organism intracellular transport	BP