PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PtJG35440 View in Genome Browser
Position	chr11:1085053017-1085085465 (-) 32448bp
Gene Type	gene
Gene Description (Protein Product)	Heme oxygenase
Organism	Pinus tabuliformis
Also AS	AT2G26670

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtXG06440 Ribosomal protein P0 is the functional equivalent of E.coli protein L10 PtXG17810 Belongs to the glutathione peroxidase family PtXG17810
Regulatory gene	Pt0G01630 dof zinc finger protein Pt0G07980 dof zinc finger protein Pt0G40380 Heat stress transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004392	heme oxygenase (decyclizing) activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006629	lipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0006721	terpenoid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006778	porphyrin-containing compound metabolic process	BP
GO:0006787	porphyrin-containing compound catabolic process	BP
GO:0006788	heme oxidation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009056	catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009314	response to radiation	BP
GO:0009411	response to UV	BP
GO:0009416	response to light stimulus	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009648	photoperiodism	BP
GO:0009791	post-embryonic development	BP
GO:0009812	flavonoid metabolic process	BP
GO:0009813	flavonoid biosynthetic process	BP
GO:0009888	tissue development	BP
GO:0009987	cellular process	BP
GO:0010019	chloroplast-nucleus signaling pathway	BP
GO:0010024	phytochromobilin biosynthetic process	BP
GO:0010073	meristem maintenance	BP
GO:0010075	regulation of meristem growth	BP
GO:0010119	regulation of stomatal movement	BP
GO:0010225	response to UV-C	BP
GO:0010228	vegetative to reproductive phase transition of meristem	BP
GO:0010229	inflorescence development	BP
GO:0016108	tetraterpenoid metabolic process	BP
GO:0016109	tetraterpenoid biosynthetic process	BP
GO:0016114	terpenoid biosynthetic process	BP
GO:0016116	carotenoid metabolic process	BP
GO:0016117	carotenoid biosynthetic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0020037	heme binding	MF
GO:0022414	reproductive process	BP
GO:0023052	signaling	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033013	tetrapyrrole metabolic process	BP
GO:0033014	tetrapyrrole biosynthetic process	BP
GO:0033015	tetrapyrrole catabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034644	cellular response to UV	BP
GO:0040008	regulation of growth	BP
GO:0042168	heme metabolic process	BP
GO:0042440	pigment metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046148	pigment biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046906	tetrapyrrole binding	MF
GO:0048037	obsolete cofactor binding	MF
GO:0048367	shoot system development	BP
GO:0048507	meristem development	BP
GO:0048509	regulation of meristem development	BP
GO:0048573	photoperiodism, flowering	BP
GO:0048608	reproductive structure development	BP
GO:0048638	regulation of developmental growth	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051187	obsolete cofactor catabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0051202	phytochromobilin metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071478	cellular response to radiation	BP
GO:0071482	cellular response to light stimulus	BP
GO:0071494	cellular response to UV-C	BP
GO:0071704	organic substance metabolic process	BP
GO:0090567	reproductive shoot system development	BP
GO:0097159	organic cyclic compound binding	MF
GO:0104004	cellular response to environmental stimulus	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00860	Porphyrin and chlorophyll metabolism	-