PPGR - Gene Detail

Gene ID	PtJG41460 View in Genome Browser
Position	chr11:1260248732-1260249600 (-) 868bp
Gene Type	gene
Gene Description (Protein Product)	"Calmodulin mediates the control of a large number of enzymes
Organism	Pinus tabuliformis
Also AS	AT5G21274

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	PtQG01240 PtQG01240 Belongs to the short-chain dehydrogenases reductases (SDR) family PtQG05440 Belongs to the group II decarboxylase family
Regulatory gene	Pt0G30270 G patch domain-containing protein Pt1G34070 ZINC FINGER protein Pt1G50660 zinc finger

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005856	cytoskeleton	CC
GO:0005874	microtubule	CC
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0019722	calcium-mediated signaling	BP
GO:0019932	second-messenger-mediated signaling	BP
GO:0023052	signaling	BP
GO:0035556	intracellular signal transduction	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0099080	supramolecular complex	CC
GO:0099081	supramolecular polymer	CC
GO:0099512	supramolecular fiber	CC
GO:0099513	polymeric cytoskeletal fiber	CC

KEGG Term	Name	Description
map04626	Plant-pathogen interaction	Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.
map04070	Phosphatidylinositol signaling system	-