PPGR - Gene Detail

Gene ID	PtQG05830 View in Genome Browser
Position	chr12:173124059-173622141 (+) 498082bp
Gene Type	gene
Gene Description (Protein Product)	Anaphase-promoting complex subunit
Organism	Pinus tabuliformis
Also AS	AT5G05560

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	PtQG07460 Belongs to the cullin family PtQG41190 E3 ubiquitin-protein ligase PtQG41190
Regulatory gene	Pt0G01110 Myb-like DNA-binding domain Pt0G01630 dof zinc finger protein Pt0G06240 Transcription factor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0009553	embryo sac development	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009908	flower development	BP
GO:0010154	fruit development	BP
GO:0010252	auxin homeostasis	BP
GO:0022414	reproductive process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0035670	plant-type ovary development	BP
GO:0042592	homeostatic process	BP
GO:0048229	gametophyte development	BP
GO:0048316	seed development	BP
GO:0048367	shoot system development	BP
GO:0048437	floral organ development	BP
GO:0048438	floral whorl development	BP
GO:0048440	carpel development	BP
GO:0048467	gynoecium development	BP
GO:0048481	plant ovule development	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0048878	chemical homeostasis	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0090567	reproductive shoot system development	BP
GO:0099402	plant organ development	BP

KEGG Term	Name	Description
map04120	Ubiquitin mediated proteolysis	Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.