Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtQG18980
View in Genome Browser
Position
chr12:604693262-604695521 (-)
2259bp
Gene Type
gene
Gene Description (Protein Product)
Histone H3.3-like
Organism
Pinus tabuliformis
Also AS AT5G10980

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG05550 Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family
PtQG29610 histone-lysine N-methyltransferase, H3 lysine-9 specific
PtXG35920 Belongs to the histone deacetylase family. HD Type 1 subfamily
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G48760 Zinc-finger homeodomain protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000785 chromatin CC
GO:0000786 nucleosome CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0006323 chromosome organization BP
GO:0006325 chromatin organization BP
GO:0006333 chromatin organization BP
GO:0006334 nucleosome assembly BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0022607 cellular component assembly BP
GO:0031490 chromatin DNA binding MF
GO:0031491 nucleosome binding MF
GO:0031492 nucleosomal DNA binding MF
GO:0031497 chromatin organization BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0034622 protein-containing complex assembly BP
GO:0034728 nucleosome organization BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044815 DNA packaging complex CC
GO:0044877 protein-containing complex binding MF
GO:0051276 chromosome organization BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0071103 DNA conformation change BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:1901363 heterocyclic compound binding MF