PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PtQG28120 View in Genome Browser
Position	chr12:939877788-940071679 (+) 193891bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Organism	Pinus tabuliformis
Also AS	AT3G20290

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtXG06780 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) PtXG19150 Alpha,alpha-trehalose-phosphate synthase UDP-forming 6 PtXG41140 Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Regulatory gene	Pt0G01110 Myb-like DNA-binding domain Pt0G01630 dof zinc finger protein Pt0G06240 Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005769	early endosome	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0005929	cilium	CC
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006897	endocytosis	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006972	hyperosmotic response	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0007399	nervous system development	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009506	plasmodesma	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009987	cellular process	BP
GO:0010008	endosome membrane	CC
GO:0010033	response to organic substance	BP
GO:0010830	regulation of myotube differentiation	BP
GO:0010831	positive regulation of myotube differentiation	BP
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016192	vesicle-mediated transport	BP
GO:0016197	endosomal transport	BP
GO:0020016	ciliary pocket	CC
GO:0020018	ciliary pocket membrane	CC
GO:0022008	neurogenesis	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0022607	cellular component assembly	BP
GO:0030030	cell projection organization	BP
GO:0030031	cell projection assembly	BP
GO:0030054	cell junction	CC
GO:0030154	cell differentiation	BP
GO:0030182	neuron differentiation	BP
GO:0031090	organelle membrane	CC
GO:0031175	neuron projection development	BP
GO:0031253	cell projection membrane	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031901	early endosome membrane	CC
GO:0031982	vesicle	CC
GO:0032386	regulation of intracellular transport	BP
GO:0032388	positive regulation of intracellular transport	BP
GO:0032456	endocytic recycling	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032879	regulation of localization	BP
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0034613	protein localization	BP
GO:0042221	response to chemical	BP
GO:0042538	hyperosmotic salinity response	BP
GO:0042886	amide transport	BP
GO:0042995	cell projection	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044433	obsolete cytoplasmic vesicle part	CC
GO:0044440	obsolete endosomal part	CC
GO:0044441	obsolete ciliary part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0044782	cilium organization	BP
GO:0045184	establishment of protein localization	BP
GO:0045595	regulation of cell differentiation	BP
GO:0045597	positive regulation of cell differentiation	BP
GO:0046907	intracellular transport	BP
GO:0048468	cell development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048666	neuron development	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051094	positive regulation of developmental process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051130	positive regulation of cellular component organization	BP
GO:0051147	regulation of muscle cell differentiation	BP
GO:0051149	positive regulation of muscle cell differentiation	BP
GO:0051153	regulation of striated muscle cell differentiation	BP
GO:0051155	positive regulation of striated muscle cell differentiation	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051259	protein complex oligomerization	BP
GO:0051260	protein homooligomerization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0055037	recycling endosome	CC
GO:0055038	recycling endosome membrane	CC
GO:0055044	symplast	CC
GO:0060142	regulation of syncytium formation by plasma membrane fusion	BP
GO:0060143	positive regulation of syncytium formation by plasma membrane fusion	BP
GO:0060170	ciliary membrane	CC
GO:0060271	cilium assembly	BP
GO:0060341	regulation of cellular localization	BP
GO:0060627	regulation of vesicle-mediated transport	BP
GO:0061512	protein localization to cilium	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070848	response to growth factor	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070925	organelle assembly	BP
GO:0071310	cellular response to organic substance	BP
GO:0071363	cellular response to growth factor stimulus	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098590	plasma membrane region	CC
GO:0098657	import into cell	BP
GO:0098805	membrane	CC
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120031	plasma membrane bounded cell projection assembly	BP
GO:0120036	plasma membrane bounded cell projection organization	BP
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1901739	regulation of myoblast fusion	BP
GO:1901741	positive regulation of myoblast fusion	BP
GO:1990089	response to nerve growth factor	BP
GO:1990090	cellular response to nerve growth factor stimulus	BP
GO:2001135	regulation of endocytic recycling	BP
GO:2001137	positive regulation of endocytic recycling	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.