PPGR - Gene Detail

Basic Information

Gene ID	PtQG43170 View in Genome Browser
Position	chr12:1370641118-1370645028 (-) 3910bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the ATG8 family
Organism	Pinus tabuliformis
Also AS	AT1G62040

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PtXG08240 RING FYVE PHD-type zinc finger family protein

PtXG08240

PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Regulatory gene

Pt0G01630 dof zinc finger protein

Pt0G07980 dof zinc finger protein

Pt1G48760 Zinc-finger homeodomain protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0006950	response to stress	BP
GO:0006995	cellular response to nitrogen starvation	BP
GO:0007154	cell communication	BP
GO:0008150	biological_process	BP
GO:0009267	cellular response to starvation	BP
GO:0009605	response to external stimulus	BP
GO:0009987	cellular process	BP
GO:0009991	response to extracellular stimulus	BP
GO:0031667	response to nutrient levels	BP
GO:0031668	cellular response to extracellular stimulus	BP
GO:0031669	cellular response to nutrient levels	BP
GO:0033554	cellular response to stress	BP
GO:0042594	response to starvation	BP
GO:0043562	cellular response to nitrogen levels	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0071496	cellular response to external stimulus	BP