Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG08800
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Position
chr10:263108559-263109085 (-)
526bp
Gene Type
gene
Gene Description (Protein Product)
fatty acid beta-oxidation multifunctional protein
Organism
Pinus tabuliformis
Also AS AT3G06860

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
PtXG22250 Ubiquitin family
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005777 peroxisome CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006635 fatty acid beta-oxidation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009062 fatty acid catabolic process BP
GO:0009506 plasmodesma CC
GO:0009987 cellular process BP
GO:0016042 lipid catabolic process BP
GO:0016054 organic acid catabolic process BP
GO:0016491 oxidoreductase activity MF
GO:0016508 long-chain-enoyl-CoA hydratase activity MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016836 hydro-lyase activity MF
GO:0019395 fatty acid oxidation BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030054 cell junction CC
GO:0030258 lipid modification BP
GO:0030312 external encapsulating structure CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032787 monocarboxylic acid metabolic process BP
GO:0034440 lipid oxidation BP
GO:0042579 microbody CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044242 cellular lipid catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046395 carboxylic acid catabolic process BP
GO:0055044 symplast CC
GO:0055114 obsolete oxidation-reduction process BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072329 monocarboxylic acid catabolic process BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00592 alpha-Linolenic acid metabolism -
map00071 Fatty acid metabolism -