PPGR - Gene Detail

Basic Information

Gene ID	PtXG10850 View in Genome Browser
Position	chr10:325891647-325892952 (+) 1305bp
Gene Type	gene
Gene Description (Protein Product)	Long chain acyl-CoA synthetase
Organism	Pinus tabuliformis
Also AS	AT2G47240

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

PtXG22250 Ubiquitin family

PtXG20510 Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I

Regulatory gene

Pt0G01110 Myb-like DNA-binding domain

Pt0G01630 dof zinc finger protein

Pt0G03060 homeobox-leucine zipper protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001676	long-chain fatty acid metabolic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004467	long-chain fatty acid-CoA ligase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0006082	organic acid metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006631	fatty acid metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010025	wax biosynthetic process	BP
GO:0010143	cutin biosynthetic process	BP
GO:0010166	wax metabolic process	BP
GO:0012505	endomembrane system	CC
GO:0015645	fatty acid ligase activity	MF
GO:0016405	CoA-ligase activity	MF
GO:0016874	ligase activity	MF
GO:0016877	ligase activity, forming carbon-sulfur bonds	MF
GO:0016878	acid-thiol ligase activity	MF
GO:0019752	carboxylic acid metabolic process	BP
GO:0031957	very long-chain fatty acid-CoA ligase activity	MF
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0071704	organic substance metabolic process	BP
GO:1901568	fatty acid derivative metabolic process	BP
GO:1901570	fatty acid derivative biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map04146	Peroxisome	Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
map01100	Metabolic pathways	-
map00071	Fatty acid metabolism	-
map00061	Fatty acid biosynthesis	-