PPGR - Gene Detail

Basic Information

Gene ID	PtXG21800 View in Genome Browser
Position	chr10:652949678-652954136 (+) 4458bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the peptidase C1 family
Organism	Pinus tabuliformis
Also AS	AT1G47128

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PtXG22250 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

PtXG22250 Ubiquitin family

PtXG24690 Belongs to the 14-3-3 family

Regulatory gene

Pt0G01630 dof zinc finger protein

Pt0G07980 dof zinc finger protein

Pt0G34770 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000323	lytic vacuole	CC
GO:0000932	P-body	CC
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004175	endopeptidase activity	MF
GO:0004197	cysteine-type endopeptidase activity	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005615	extracellular space	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005764	lysosome	CC
GO:0005773	vacuole	CC
GO:0005911	cell-cell junction	CC
GO:0006508	proteolysis	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008234	cysteine-type peptidase activity	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009620	response to fungus	BP
GO:0009987	cellular process	BP
GO:0010494	cytoplasmic stress granule	CC
GO:0016787	hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0030054	cell junction	CC
GO:0030163	protein catabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0035770	ribonucleoprotein granule	CC
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044421	obsolete extracellular region part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048046	apoplast	CC
GO:0050832	defense response to fungus	BP
GO:0050896	response to stimulus	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0055044	symplast	CC
GO:0070011	peptidase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:0098542	defense response to other organism	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1990904	ribonucleoprotein complex	CC