Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG39540
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Position
chr10:1232097155-1232223162 (-)
126007bp
Gene Type
gene
Gene Description (Protein Product)
5-formyltetrahydrofolate cyclo-ligase
Organism
Pinus tabuliformis
Also AS AT5G13050

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG42810 Pentatricopeptide repeat-containing protein
PtXG51680 BEST Arabidopsis thaliana protein match is
Regulatory gene
Pt6G52280 Tesmin/TSO1-like CXC domain
Pt7G39150 tesmin TSO1-like CXC

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006082 organic acid metabolic process BP
GO:0006575 cellular modified amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006730 one-carbon metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006760 folic acid-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009396 folic acid-containing compound biosynthetic process BP
GO:0009987 cellular process BP
GO:0016053 organic acid biosynthetic process BP
GO:0016874 ligase activity MF
GO:0016879 ligase activity, forming carbon-nitrogen bonds MF
GO:0016882 cyclo-ligase activity MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035999 tetrahydrofolate interconversion BP
GO:0042398 cellular modified amino acid biosynthetic process BP
GO:0042558 pteridine-containing compound metabolic process BP
GO:0042559 pteridine-containing compound biosynthetic process BP
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046653 tetrahydrofolate metabolic process BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00670 One carbon pool by folate -