Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG41760
View in Genome Browser
Position
chr10:1285120252-1285336012 (-)
215760bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the adaptor complexes medium subunit family
Organism
Pinus tabuliformis
Also AS AT5G46630

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG52840 Belongs to the universal ribosomal protein uS11 family
PtXG52860 60S ribosomal Protein
PtXG51410 60S ribosomal Protein
Regulatory gene
Pt0G01110 Myb-like DNA-binding domain
Pt0G06240 Transcription factor
Pt0G27150 transcription repressor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005886 plasma membrane CC
GO:0005905 clathrin-coated pit CC
GO:0012505 endomembrane system CC
GO:0012506 vesicle membrane CC
GO:0016020 membrane CC
GO:0030117 membrane coat CC
GO:0030118 clathrin coat CC
GO:0030119 AP-type membrane coat adaptor complex CC
GO:0030120 vesicle coat CC
GO:0030122 AP-2 adaptor complex CC
GO:0030125 clathrin vesicle coat CC
GO:0030128 clathrin coat of endocytic vesicle CC
GO:0030131 clathrin adaptor complex CC
GO:0030132 clathrin coat of coated pit CC
GO:0030135 coated vesicle CC
GO:0030136 clathrin-coated vesicle CC
GO:0030139 endocytic vesicle CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030662 coated vesicle membrane CC
GO:0030665 clathrin-coated vesicle membrane CC
GO:0030666 endocytic vesicle membrane CC
GO:0030669 clathrin-coated endocytic vesicle membrane CC
GO:0031090 organelle membrane CC
GO:0031201 SNARE complex CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0045334 clathrin-coated endocytic vesicle CC
GO:0048475 coated membrane CC
GO:0071944 cell periphery CC
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098796 membrane protein complex CC
GO:0098797 plasma membrane protein complex CC
GO:0098805 membrane CC
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.